Tuesday, March 11, 2014

Bear species' genetic relationships determined

New research from the University of Alaska Fairbanks has quantified the genetic differences between polar, brown and black bears.

Matthew Cronin, professor of animal genetics with the UAF School of Natural Resources and Extension and colleagues at the University of California Davis and Delta G Co. published a paper on bear genetics in the Journal of Heredity online in January. The paper, which will be printed in the next few months, describes the research involving genome sequence comparisons of the three bear species.

brown bear
Cronin also published papers on the relationships of the bears with different genetic analyses in 2012 with a collaborator at the U.S. Department of Agriculture in the Journal of Heredity, and in 2013 with co-workers at Texas Tech University in the Canadian Journal of Zoology.

The 2014 paper replicates other research on bear genomes but includes analysis of genetic variation in more than 300 bears from Alaska and genetic elements not assessed previously in bears. These are known as ultra-conserved elements, and show the polar and brown bears to be more closely related than either is to black bears.

The data was used in a “molecular clock” that uses the numbers of differences (mutations) in DNA sequences to estimate when the sequences, and hence the species, diverged. The data suggest that polar bears and brown bears diverged as different species 1.2 million years ago, and black bears diverged from the polar/brown bear lineage 2.3 million years ago.  These estimates are within the ranges in other studies.

Utilizing labs at the University of California Davis, Cronin and technology experts pored over huge datasets. He also analyzed tissue samples from Montana and from Alaska’s Admiralty, Baranof and Chichagof islands, obtained from state and federal wildlife agencies. In recent years DNA science has improved so much that Cronin is able to study billions of nucleotides of DNA rather than the thousands he used to be limited to. “It’s very advanced because of the applications in medicine and agriculture,” Cronin said.

“The ramifications are that if the polar bear was an independent species for about 1 million years it survived previous cold and warm periods,” Cronin said. “This means the polar bear has been an independent lineage a long time through glacial and interglacial and warm periods.”

The last glacial period was at maximum extent about 22,000 years ago, and was preceded by a warm interglacial period about 130,000 years ago. Other warm and cold periods preceded that. Cronin thinks that if polar bears survived previous warm periods in which there was little or no arctic summer sea ice, this should be used in  models predicting the species’ response to current climate change.

“It seems logical that if polar bears survived previous warm, ice-free periods, they could survive another. This is of course speculation, but so is predicting they will not survive, as the proponents of the endangered species act listing of polar bears have done.”

Cronin has been studying animal genetics for 25 years. He recently researched wood bison and plains bison. Comparing wolves in Southeast Alaska to species across the country is his next area of research.

No comments: